Update on Thursday, 4 April 2024: GC-ElecEng 2024 is technically co-sponsored by IEEE Jordan Section. Application for IEEE technical co-sponsorship is in progress.
Analysis Of Peak-To-Average Power Ratio Of Orthogonal Chirp Division Multiplexing Multicarrier System Based on The Discrete Fractional Cosine Transform
41-46
41.Cnf-570 Paper View Page
Title
Gibbs-BECA: Gibbs Sampling and Bayesian Estimation for Comparative Assembly
This paper is an extension of our previous work Bayesian Estimation for Comparative Assembly (BECA), a framework that uses Quality (Q) values for identifying probabilities of the base calls for every read and subsequently uses them to find probabilistically the best alignments and the consensus sequence. BECA used the `alignment-layout-consensus' paradigm to identify the novel sequence. However, it drifts away from the traditional algorithmic approach to adopt a more intensive probabilistic measure, treating every quantity as a random variable, including the reference sequence, the set of reads, the alignment and the novel sequence. This paper extends BECA by using Gibbs sampling for further iterations of BECA. The first iteration takes the reference sequence and the set of reads to arrive to a novel sequence. However, after each iteration the new novel sequence is assumed as the new reference sequence and the process is repeated such that after a number of iterations the final sequence matches the true sequence with minimal errors. These iterations are done with the help of Gibbs-Sampling thereby referring to this algorithm as Gibbs-BECA.
4th Mosharaka International Conference on Mobile Computing and Wireless Communications (MIC-MCWC 2013)
Congress
2013 Global Congress on Mobile Computing and Wireless Communications (GC-MCWC 2013), 14-16 June 2013, Valencia, Spain
Pages
6-11
Topics
Bioinformatics DNA and Protein Sequence Analysis
ISSN
2227-331X
DOI
BibTeX
@inproceedings{570MCWC2013,
title={Gibbs-BECA: Gibbs Sampling and Bayesian Estimation for Comparative Assembly},
author={Bilal Wajid, and Mohamed Nounou, and Hazem Nounou, and Muhammad Naeem Ayyaz, and Erchin Serpedin},
booktitle={2013 Global Congress on Mobile Computing and Wireless Communications (GC-MCWC 2013)},
year={2013},
pages={6-11},
doi={}},
organization={Mosharaka for Research and Studies}
}
